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dc.contributor.authorAfshinnekoo, Ebrahim
dc.contributor.authorMeydan, Cem
dc.contributor.authorChowdhury, Shanin
dc.contributor.authorJaroudi, Dyala
dc.contributor.authorBoyer, Collin
dc.contributor.authorBernstein, Nick
dc.contributor.authorMaritz, Julia M.
dc.contributor.authorReeves, Darryl
dc.contributor.authorGandara, Jorge
dc.contributor.authorChhangawala, Sagar
dc.contributor.authorAhsanuddin, Sofia
dc.contributor.authorSimmons, Amber
dc.contributor.authorNessel, Timothy
dc.contributor.authorSundaresh, Bharathi
dc.contributor.authorPereira, Elizabeth
dc.contributor.authorJorgensen, Ellen
dc.contributor.authorKolokotronis, Sergios-Orestis
dc.contributor.authorKirchberger, Nell
dc.contributor.authorGarcia, Isaac
dc.contributor.authorGandara, David
dc.contributor.authorDhanraj, Sean
dc.contributor.authorNawrin, Tanzina
dc.contributor.authorSaletore, Yogesh
dc.contributor.authorAlexander, Noah
dc.contributor.authorVijay, Priyanka
dc.contributor.authorHénaff, Elizabeth M.
dc.contributor.authorZumbo, Paul
dc.contributor.authorWalsh, Michael
dc.contributor.authorO’Mullan, Gregory D.
dc.contributor.authorTighe, Scott
dc.contributor.authorDudley, Joel T.
dc.contributor.authorDunaif, Anya
dc.contributor.authorEnnis, Sean
dc.contributor.authorO’Halloran, Eoghan
dc.contributor.authorMagalhaes, Tiago R.
dc.contributor.authorBoone, Braden
dc.contributor.authorJones, Angela L.
dc.contributor.authorMuth, Theodore R.
dc.contributor.authorPaolantonio, Katie Schneider
dc.contributor.authorAlter, Elizabeth
dc.contributor.authorSchadt, Eric E.
dc.contributor.authorGarbarino, Jeanne
dc.contributor.authorPrill, Robert J.
dc.contributor.authorCarlton, Jane M.
dc.contributor.authorLevy, Shawn
dc.contributor.authorMason, Christopher E.
dc.date.accessioned2022-08-25T18:54:15Z
dc.date.available2022-08-25T18:54:15Z
dc.date.issued2015-07
dc.identifier.citationAfshinnekoo E, Meydan C, Chowdhury S, Jaroudi D, Boyer C, Bernstein N, Maritz JM, Reeves D, Gandara J, Chhangawala S, Ahsanuddin S, Simmons A, Nessel T, Sundaresh B, Pereira E, Jorgensen E, Kolokotronis SO, Kirchberger N, Garcia I, Gandara D, Dhanraj S, Nawrin T, Saletore Y, Alexander N, Vijay P, Hénaff EM, Zumbo P, Walsh M, O'Mullan GD, Tighe S, Dudley JT, Dunaif A, Ennis S, O'Halloran E, Magalhaes TR, Boone B, Jones AL, Muth TR, Paolantonio KS, Alter E, Schadt EE, Garbarino J, Prill RJ, Carlton JM, Levy S, Mason CE. Geospatial Resolution of Human and Bacterial Diversity with City-Scale Metagenomics. Cell Syst. 2015 Jul 29;1(1):72-87. doi: 10.1016/j.cels.2015.01.001. Epub 2015 Mar 3. PMID: 26594662; PMCID: PMC4651444.en_US
dc.identifier.issn2405-4712
dc.identifier.doi10.1016/j.cels.2015.01.001
dc.identifier.pmid26594662
dc.identifier.piiS2405471215000022
dc.identifier.urihttp://hdl.handle.net/20.500.12648/7507
dc.description.abstractThe panoply of microorganisms and other species present in our environment influence human health and disease, especially in cities, but have not been profiled with metagenomics at a city-wide scale. We sequenced DNA from surfaces across the entire New York City (NYC) subway system, the Gowanus Canal, and public parks. Nearly half of the DNA (48%) does not match any known organism; identified organisms spanned 1,688 bacterial, viral, archaeal, and eukaryotic taxa, which were enriched for harmless genera associated with skin (e.g., Acinetobacter). Predicted ancestry of human DNA left on subway surfaces can recapitulate U.S. Census demographic data, and bacterial signatures can reveal a station's history, such as marine-associated bacteria in a hurricane-flooded station. Some evidence of pathogens was found (Bacillus anthracis), but a lack of reported cases in NYC suggests that the pathogens represent a normal, urban microbiome. This baseline metagenomic map of NYC could help long-term disease surveillance, bioterrorism threat mitigation, and health management in the built environment of cities.en_US
dc.language.isoenen_US
dc.publisherElsevier BVen_US
dc.relation.urlhttps://www.sciencedirect.com/science/article/pii/S2405471215000022en_US
dc.rightsCopyright © 2015 The Authors. Published by Elsevier Inc.
dc.rightsAttribution 4.0 International*
dc.rights.urihttps://www.elsevier.com/tdm/userlicense/1.0/
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/*
dc.subjectCell Biologyen_US
dc.subjectHistologyen_US
dc.subjectPathology and Forensic Medicineen_US
dc.titleGeospatial Resolution of Human and Bacterial Diversity with City-Scale Metagenomicsen_US
dc.typeArticle/Reviewen_US
dc.source.journaltitleCell Systemsen_US
dc.source.volume1
dc.source.issue1
dc.source.beginpage72
dc.source.endpage87
dc.description.versionVoRen_US
refterms.dateFOA2022-08-25T18:54:16Z
dc.description.institutionSUNY Downstateen_US
dc.description.departmentEpidemiology and Biostatisticsen_US
dc.description.degreelevelN/Aen_US


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